species:   Opsin
pid:       PID1960
parent:    n_os_milR_63
paralog:   
locus:     JAAVMX010000005.1:342040-342148
matures:   ['GCUCUCUACUCCGAUAUCCGGUC', 'UCGCCAAAGGGAAGUUCGAGAGAGGCAG']
srr:       SRR12952904
genome:    /Users/jax/+Genomes/Fungal_genomes/Opsin.GCA_012934285.1_ASM1293428v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952904.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952904.cram JAAVMX010000005.1:342040-342148

0 out of bounds
5 alignments
5 proper strand
5 stranded perfect matches

                        ******************************          *************************                    
CUGAACGAUUCCCAACAUCUCACGGAUCGCCAAAGGGAAGUUCGAGAGAGGCAGCUGGAGAAUGCUGCUCUCUACUCCGAUAUCCGGUCUGAUGGUGCUGGGCGCUCAG
((((.((...((((.((((...(((((((......(((.((...((((((.((((........)))))))))))))))......)))))))..)))).)))))).))))
------------------------------------------------------------------GCUCUCUACUCCGAUAUCCGGUC-------------------- l=23 a=5 c
--------------------------UCGCCAAAGGGAAGUUCGAGAGAGGCAG------------------------------------------------------- l=28 a=0 c*
------------------------------------------------------------------GCUCUCUACUCCGAUAUCCGGUC-------------------- l=23 a=5 ma
--------------------------UCGCCAAAGGGAAGUUCGAGAGAGGCAG------------------------------------------------------- l=28 a=0 ma*

------------------------------------------------------------------GCUCUCUACUCCGAUAUCCGGUC-------------------- l=23 a=5 (c,ma)

mb-01011
ax-1001111
ku-01
ss-111111101010
fn-011
